Software
Some modules will load the necessary dependencies automatically when loaded. Other modules with prerequisites will need the prerequisites loaded before or along with that module.
For example, the module boost/1.70.0 requires compiler/intel/19. To load the boost module, do either:
module load compiler/intel/19
module load boost/1.70.0
Note
The prerequisite module must be first
module load compiler/intel/19 boost/1.70.0
Multiple Versions
Some packages list multiple compilers for prerequisites. This means that the package has been built with each version of the compilers listed.
| Name | Prerequisites | Description |
|---|---|---|
| R/3.5 | None | |
| R/3.6 | None | |
| R/4.0 | None | |
| R/4.2 | None | |
| R/4.3 | None | |
| R/4.4 | None | |
| abaqus/2016 | None | |
| abaqus/2017 | None | |
| abaqus/2023 | None | |
| abundantotu/0.95b | None | Requries at least compiler/gcc/6.5 |
| abyss/2.1.5 | None | Requries at least compiler/gcc/6.5 |
| admixture/1.3.0 | None | |
| allpathslg/52488 | None | |
| anaconda/4.10 | None | |
| anaconda/4.7 | None | |
| anaconda/latest | None | |
| angsd/0.934 | None | |
| angsd/0.94 | None | |
| ansysem/21.1 | None | |
| ant/1.10.1 | None | |
| augustus/3.3.2 | Compiler/gcc/6.5 | |
| augustus/3.4.0 | None | |
| bamtools/2.5.1 | Compiler/gcc/6.5 Compiler/gcc/8.3 | |
| bcftools/1.14 | None | |
| bcftools/1.9 | None | |
| bcl2fastq2/2.20.0 | None | |
| beagle/3.1.2 | None | |
| beast/1.10.4 | None | |
| beast2/2.6.7 | None | |
| bedtools/2.30.0 | None | |
| blasr/5.3.3 | None | |
| blast+/2.9.0 | None | |
| boost/1.63.0 | Compiler/gcc/6.5 Compiler/gcc/8.3 | |
| boost/1.70.0 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/18 Compiler/intel/19 | |
| boost/1.71.0 | Compiler/gcc/8.3 | |
| boost/1.76.0 | Compiler/gcc/8.3 | |
| boost/1.81.0 | Compiler/intel/22 | |
| bowtie/1.2.3 | None | |
| bowtie2/2.3.5.1 | None | Requries at least compiler/gcc/6.5 |
| braker/2.1.6 | None | |
| braker/3.0.3 | None | |
| busco/3.0.2 | None | |
| busco/5.5.0 | None | |
| bwa/0.7.17 | None | |
| caffe/1.0 | None | |
| canu/1.8 | None | |
| canu/2.1.1 | None | |
| cdhit/4.8.1 | None | Requries at least compiler/gcc/6.5 |
| charmm/49b1-cuda | None | |
| charmm/49b1 | None | |
| cmake/3.14.5 | Compiler/gcc/5.4 Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/18 Compiler/intel/19 | |
| cmake/3.21.3 | Compiler/gcc/11.1 Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/18 Compiler/intel/19 | |
| cmake/3.25.1 | Compiler/intel/22 | |
| cmake/3.28.3 | Compiler/gcc/11.1 | |
| code-server/4.16.1 | None | |
| compiler/gcc/.5.4 | None | |
| compiler/gcc/.6.3 | None | |
| compiler/gcc/11.1 | None | |
| compiler/gcc/13.2 | None | |
| compiler/gcc/6.5 | None | |
| compiler/gcc/8.3 | None | |
| compiler/intel/.17 | None | |
| compiler/intel/18 | None | |
| compiler/intel/19 | None | |
| compiler/intel/22 | None | |
| compiler/pgi/19 | None | |
| conda/4.10 | None | |
| conda/4.7 | None | |
| conda/latest | None | |
| converge/3.1.9 | None | |
| converge/4.1.0 | None | |
| cp2k/6.1/.popt-18 | None | |
| cp2k/6.1/popt | None | |
| cp2k/8.2/psmp | None | |
| cuda-intel/12.4 | Compiler/intel/22 | |
| cuda/10.1 | None | |
| cuda/11.0 | None | |
| cuda/11.2 | None | |
| cuda/11.7 | None | |
| cuda/12.4 | None | Requries at least compiler/gcc/8.3 |
| cuda/9.2 | None | |
| cudnn/8.9.7 | None | |
| cudnn/9.2.0 | None | |
| curl/7.85.0 | None | |
| cutadapt/2.3 | None | |
| cutadapt/4.2 | None | |
| dalton/2016.0 | None | |
| deeptools/3.5.5 | None | |
| dmtcp/2.5.2 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/19 | |
| dorado/0.6.1 | None | |
| dsuite/r53 | None | |
| edirect/1.0 | None | |
| eems/c1849ea | None | |
| emacs/28.2 | None | |
| exabayes/1.5 | None | |
| exonerate/2.2.0 | None | Requries at least compiler/gcc/6.5 |
| fastqc/0.11.8 | None | |
| fastx_toolkit/0.0.14 | None | |
| feko/2021.2 | None | |
| fftw/2.1.5 | Compiler/gcc/8.3 | |
| fftw3/3.3.8 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/pgi/19 | |
| flash/1.2.11 | None | |
| flye/2.9.3 | None | |
| freebayes/1.3.6 | None | |
| fsl/6.0.5.2 | None | |
| gatk/4.1.2.0 | None | |
| gdal/3.0.0 | None | |
| gdal/3.4.2 | None | |
| gdb/8.3 | None | |
| geos/3.7.2 | None | |
| git/2.31.1 | None | |
| globus-cli/3.1.2 | None | |
| gnuplot/5.2.7 | None | |
| grace/5.1.25 | None | |
| graphicsmagick/1.3.32 | None | |
| graphviz/2.40.1 | None | |
| gromacs/2019.3 | None | |
| gromacs/2019.4 | None | |
| gromacs/2022.4 | None | |
| gromacs/2024.2 | None | |
| gromacs/5.1.5 | None | |
| hdf5/1.10.5 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/19 Compiler/pgi/19 | |
| hdf5/1.12.1 | Compiler/gcc/11.1 Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/19 | |
| hhsuite/3.2.0 | None | |
| hisat2/2.2.1 | None | |
| hmmer/3.2.1 | None | |
| hpcx/2.5.0 | None | |
| htseq/2.0.4 | None | |
| htslib/1.14 | None | |
| htslib/1.9 | None | |
| imagemagick/6.9.10 | None | |
| imagemagick/7.1.1 | None | |
| intel-mpi/18 | Compiler/intel/18 | |
| intel-mpi/19 | Compiler/intel/19 | |
| intel-mpi/22 | Compiler/intel/22 | |
| ipyrad/0.7.30 | None | |
| ipyrad/0.9.50 | None | |
| iqtree/2.2.0 | None | |
| iqtree/2.2.2.3 | None | |
| jags/4.3.0 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/19 | |
| jasper/1.900.29 | Compiler/gcc/8.3 | |
| java/1.8.0_212 | None | |
| jellyfish/2.2.10 | None | Requries at least compiler/gcc/6.5 |
| julia/1.10.3 | None | |
| jupyter-notebook/latest | None | |
| kallisto/0.46.2 | None | |
| lammps/12Dec2018 | Compiler/intel/18 | |
| lammps/27Oct2021 | None | |
| lammps/29Aug2024 | None | |
| lammps/29Oct2020 | None | |
| lammps/3Mar2020 | None | |
| lapack/3.8.0 | None | |
| libfabric/1.8.0 | Compiler/intel/19 | |
| longshot/0.4.1 | None | |
| maker/2.31.10 | None | |
| maple/2022 | None | |
| matlab/2017b | None | |
| matlab/2018b | None | |
| matlab/2019a | None | |
| matlab/2021b | None | |
| matlab/2023b | None | |
| medaka/1.11.3 | None | |
| mirdeep2/0.1.3 | None | |
| mitobim/1.9.1 | None | |
| molden/5.9 | None | |
| mrbayes/3.2.7-mpi | None | |
| mrbayes/3.2.7 | None | |
| mummer/4.0.0rc1 | None | |
| muscle/3.8.31 | None | |
| namd/2.13_ibverbs | None | |
| namd/2.13_mpi | None | |
| namd/2.13_multicore | None | |
| nanopolish/0.14.0 | None | |
| nbo/6.0 | None | |
| netcdf/4.7.0 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/19 Compiler/pgi/19 | |
| netcdf/4.7.4 | Compiler/gcc/8.3 | |
| ngstools/20170620 | None | |
| nvidia/hpc-sdk | None | |
| nwchem/6.8.1 | None | |
| octave/5.1.0 | None | |
| openbabel/2.4.1 | None | Requries at least compiler/gcc/6.5 |
| openbabel/3.1.1 | None | Requries at least compiler/gcc/6.5 |
| openblas/0.3.6 | None | |
| openjdk/11 | None | |
| openmm/8.1.1 | None | |
| openmpi/1.10 | Compiler/gcc/8.3 | |
| openmpi/2.1 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/19 Compiler/pgi/19 | |
| openmpi/3.1 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/19 Compiler/pgi/19 | |
| openmpi/4.0 | Compiler/gcc/11.1 Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/18 Compiler/intel/19 Compiler/intel/22 | |
| openmpi/4.1-rocm | Compiler/gcc/13.2 | |
| openmpi/4.1 | Compiler/gcc/13.2 Compiler/gcc/11.1 Compiler/gcc/13.2 Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/18 Compiler/intel/19 Compiler/intel/22 | |
| orca/4.2.1-openmpi2 | None | |
| orca/4.2.1 | None | |
| orca/5.0.3 | None | |
| orca/6.0.0 | None | |
| p4vasp/0.3.30 | None | Requries at least vasp/5.4.4 |
| paml/4.9j | None | |
| parafold/2.0 | None | |
| pear/0.9.11 | None | |
| perl/5.30 | None | |
| picard/2.20.3 | None | |
| poppler/0.26.5 | Compiler/gcc/8.3 | |
| prank/170427 | None | |
| proj/6.0.0 | None | |
| proj/6.3.2 | None | |
| pylammps/29Oct2020 | None | |
| pylammps/3Mar2020-gpu | None | |
| pylammps/3Mar2020 | None | |
| python/2.7 | None | |
| python/3.7 | None | |
| pytorch-cpu/2.0.0 | None | |
| pytorch-gpu/2.0.0 | None | |
| qhull/7.3.2 | None | |
| qiime/1.9.1 | None | |
| qiime2/latest | None | |
| qiime2/metagenome/latest | None | |
| qt/5.12.1 | None | Requries at least compiler/gcc/6.5 |
| quast/5.0.2 | None | |
| raxml-ng/0.9.0 | None | |
| raxml/8.2.12 | None | |
| remora/1.8.5 | Compiler/intel/19 | |
| repeatmasker/4.0.9 | None | |
| repeatmasker/4.1.2 | None | |
| repeatmasker/4.1.5 | None | |
| repeatmodeler/1.0.11 | None | |
| repeatmodeler/2.0.1 | None | |
| revbayes/1.2.4 | None | |
| rocm/5.3.3 | None | |
| rocm/5.7.3 | None | |
| rocm/6.1.2 | None | |
| root/6.24.02 | None | |
| root/6.28.04 | None | |
| root/6.30.04 | None | |
| rosetta/3.10-gcc | None | |
| rosetta/3.10-intel | None | |
| rosetta/3.12 | None | |
| rosetta/3.13 | None | |
| rsem/1.3.1 | None | Requries at least compiler/gcc/6.5 |
| rstudio-server/2023.12.1 | None | |
| rstudio/1.2.1335 | None | Requries at least compiler/gcc/6.5 |
| rstudio/2022.07.2 | None | |
| sac/102.0 | None | |
| salmon/0.14.1 | None | |
| salmon/1.10.1 | None | |
| samtools/1.14 | None | |
| samtools/1.9 | None | |
| sas/9.4 | None | |
| scalapack/2.0.2 | None | |
| signalp/6.0 | None | |
| singularity/3.8.3 | None | |
| snap/20131129 | None | |
| sortmerna/3.0.3 | None | Requries at least compiler/gcc/6.5 |
| spades/3.13.1 | None | Requries at least compiler/gcc/6.5 |
| spark/2.4.3 | None | |
| spyder/5 | None | |
| sratoolkit/3.0.0 | None | |
| stacks/2.41 | None | Requries at least compiler/gcc/6.5 |
| stacks/2.60 | None | Requries at least compiler/gcc/6.5 |
| stampy/1.0.32 | None | |
| star/2.7.11a | None | |
| starccm+/2206 | None | |
| starccm+/2406 | None | |
| subread/2.0.5 | None | |
| suitesparse/5.4.0 | None | Requries at least compiler/gcc/6.5 |
| sumatra/1.0.34 | None | |
| synopsys/2022.12-SP1 | None | |
| tbb/2019u8 | Compiler/gcc/6.5 Compiler/gcc/8.3 | |
| tecplot/2021r2 | None | |
| tensorflow-gpu/1.14.0 | None | |
| tensorflow-gpu/2.17.0 | None | |
| tensorflow-gpu/2.2.0 | None | |
| tensorflow/1.14.0 | None | |
| tensorflow/2.17.0 | None | |
| tensorflow/2.2.0 | None | |
| tmhmm/2.0c | None | |
| transabyss/2.0.1 | None | |
| trimmomatic/0.39 | None | |
| trinity/2.8.5 | None | |
| usearch/11.0.667 | None | |
| usearch/5.2.236 | None | |
| usearch/6.1.544 | None | |
| vasp/5.4.4 | None | |
| vcftools/0.1.16 | None | |
| viennarna/2.4.13 | None | |
| vmd/1.9.3 | None | |
| vsearch/2.13.6 | None | Requries at least compiler/gcc/6.5 |
| zlib/1.2.11 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/19 Compiler/pgi/19 |