Software
Some modules will load the necessary dependencies automatically when loaded. Other modules with prerequisites will need the prerequisites loaded before or along with that module.
For example, the module boost/1.70.0 requires compiler/intel/19. To load the boost module, do either:
module load compiler/intel/19
module load boost/1.70.0
Note
The prerequisite module must be first
module load compiler/intel/19 boost/1.70.0
Multiple Versions
Some packages list multiple compilers for prerequisites. This means that the package has been built with each version of the compilers listed.
| Name | Prerequisites | Description |
|---|---|---|
| R/3.5 | None | |
| R/3.6 | None | |
| R/4.0 | None | |
| R/4.2 | None | |
| abaqus/2016 | None | |
| abaqus/2017 | None | |
| abundantotu/0.95b | None | Requries at least compiler/gcc/6.5 |
| abyss/2.1.5 | None | Requries at least compiler/gcc/6.5 |
| allpathslg/52488 | None | |
| anaconda/4.10 | None | |
| anaconda/4.7 | None | |
| angsd/0.934 | None | |
| ansysem/21.1 | None | |
| ant/1.10.1 | None | |
| augustus/3.3.2 | Compiler/gcc/6.5 | |
| bamtools/2.5.1 | Compiler/gcc/6.5 Compiler/gcc/8.3 | |
| bcftools/1.14 | None | |
| bcftools/1.9 | None | |
| bcl2fastq2/2.20.0 | None | |
| beagle/3.1.2 | None | |
| beast/1.10.4 | None | |
| beast2/2.6.7 | None | |
| bedtools/2.30.0 | None | |
| blasr/5.3.3 | None | |
| blast+/2.9.0 | None | |
| boost/1.63.0 | Compiler/gcc/6.5 Compiler/gcc/8.3 | |
| boost/1.70.0 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/18 Compiler/intel/19 | |
| bowtie/1.2.3 | None | |
| bowtie2/2.3.5.1 | None | Requries at least compiler/gcc/6.5 |
| busco/3.0.2 | None | |
| bwa/0.7.17 | None | |
| caffe/1.0 | None | |
| canu/1.8 | None | |
| canu/2.1.1 | None | |
| cdhit/4.8.1 | None | Requries at least compiler/gcc/6.5 |
| cmake/3.14.5 | Compiler/gcc/5.4 Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/18 Compiler/intel/19 | |
| cmake/3.21.3 | Compiler/gcc/11.1 Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/18 Compiler/intel/19 | |
| compiler/gcc/.5.4 | None | |
| compiler/gcc/.6.3 | None | |
| compiler/gcc/11.1 | None | |
| compiler/gcc/6.5 | None | |
| compiler/gcc/8.3 | None | |
| compiler/intel/.17 | None | |
| compiler/intel/18 | None | |
| compiler/intel/19 | None | |
| compiler/pgi/19 | None | |
| cp2k/6.1/.popt-18 | None | |
| cp2k/6.1/popt | None | |
| cuda/10.1 | None | |
| cuda/11.2 | None | |
| cuda/9.2 | None | |
| cutadapt/2.3 | None | |
| dmtcp/2.5.2 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/19 | |
| edirect/1.0 | None | |
| eems/c1849ea | None | |
| emacs/26.2 | None | |
| exabayes/1.5 | None | |
| exonerate/2.2.0 | None | Requries at least compiler/gcc/6.5 |
| fastqc/0.11.8 | None | |
| fastx_toolkit/0.0.14 | None | |
| feko/2021.2 | None | |
| fftw/2.1.5 | Compiler/gcc/8.3 | |
| fftw3/3.3.8 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/pgi/19 | |
| flash/1.2.11 | None | |
| gatk/4.1.2.0 | None | |
| gdal/3.0.0 | None | |
| gdal/3.4.2 | None | |
| gdb/8.3 | None | |
| geos/3.7.2 | None | |
| git/2.31.1 | None | |
| globus-cli/3.1.2 | None | |
| gnuplot/5.2.7 | None | |
| grace/5.1.25 | None | |
| graphicsmagick/1.3.32 | None | |
| graphviz/2.40.1 | None | |
| gromacs/2019.3 | None | |
| gromacs/2019.4 | None | |
| gromacs/5.1.5 | None | |
| hdf5/1.10.5 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/19 Compiler/pgi/19 | |
| hdf5/1.12.1 | Compiler/gcc/11.1 Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/19 | |
| hhsuite/3.2.0 | None | |
| hmmer/3.2.1 | None | |
| hpcx/2.5.0 | None | |
| htslib/1.14 | None | |
| htslib/1.9 | None | |
| imagemagick/6.9.10 | None | |
| intel-mpi/18 | Compiler/intel/18 | |
| intel-mpi/19 | Compiler/intel/19 | |
| ipyrad/0.7.30 | None | |
| ipyrad/0.9.50 | None | |
| jags/4.3.0 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/19 | |
| java/1.8.0_212 | None | |
| jellyfish/2.2.10 | None | Requries at least compiler/gcc/6.5 |
| jupyter-notebook/6.4.0 | None | |
| kallisto/0.46.2 | None | |
| lammps/12Dec2018 | Compiler/intel/18 | |
| lammps/27Oct2021 | None | |
| lammps/29Oct2020 | None | |
| lammps/3Mar2020 | None | |
| lapack/3.8.0 | None | |
| libfabric/1.8.0 | Compiler/intel/19 | |
| longshot/0.4.1 | None | |
| maker/2.31.10 | None | |
| matlab/2017b | None | |
| matlab/2018b | None | |
| matlab/2019a | None | |
| matlab/2021b | None | |
| mirdeep2/0.1.3 | None | |
| mitobim/1.9.1 | None | |
| molden/5.9 | None | |
| mrbayes/3.2.7-mpi | None | |
| mrbayes/3.2.7 | None | |
| mummer/4.0.0rc1 | None | |
| muscle/3.8.31 | None | |
| namd/2.13_ibverbs | None | |
| namd/2.13_mpi | None | |
| namd/2.13_multicore | None | |
| nbo/6.0 | None | |
| netcdf/4.7.0 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/19 Compiler/pgi/19 | |
| ngstools/20170620 | None | |
| nwchem/6.8.1 | None | |
| octave/5.1.0 | None | |
| openbabel/2.4.1 | None | Requries at least compiler/gcc/6.5 |
| openblas/0.3.6 | None | |
| openjdk/11 | None | |
| openmpi/1.10 | Compiler/gcc/8.3 | |
| openmpi/2.1 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/19 Compiler/pgi/19 | |
| openmpi/3.1 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/19 Compiler/pgi/19 | |
| openmpi/4.0 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/18 Compiler/intel/19 | |
| openmpi/4.1 | Compiler/gcc/11.1 | |
| orca/4.2.1-openmpi2 | None | |
| orca/4.2.1 | None | |
| orca/5.0.3 | None | |
| p4vasp/0.3.30 | None | Requries at least vasp/5.4.4 |
| paml/4.9j | None | |
| pear/0.9.11 | None | |
| perl/5.30 | None | |
| picard/2.20.3 | None | |
| poppler/0.26.5 | Compiler/gcc/8.3 | |
| prank/170427 | None | |
| proj/6.0.0 | None | |
| proj/6.3.2 | None | |
| pylammps/27Oct2021 | None | |
| pylammps/29Oct2020 | None | |
| pylammps/3Mar2020-gpu | None | |
| pylammps/3Mar2020 | None | |
| python/2.7 | None | |
| python/3.7 | None | |
| qhull/7.3.2 | None | |
| qiime/1.9.1 | None | |
| qiime2/2019.10 | None | |
| qiime2/2020.6 | None | |
| qiime2/2021.2 | None | |
| qiime2/2021.4 | None | |
| qt/5.12.1 | None | Requries at least compiler/gcc/6.5 |
| quast/5.0.2 | None | |
| raxml-ng/0.9.0 | None | |
| raxml/8.2.12 | None | |
| repeatmasker/4.0.9 | None | |
| repeatmasker/4.1.2 | None | |
| repeatmodeler/1.0.11 | None | |
| repeatmodeler/2.0.1 | None | |
| root/6.24.02 | None | |
| rosetta/3.10-gcc | None | |
| rosetta/3.10-intel | None | |
| rosetta/3.12 | None | |
| rosetta/3.13 | None | |
| rsem/1.3.1 | None | Requries at least compiler/gcc/6.5 |
| rstudio/1.2.1335 | None | Requries at least compiler/gcc/6.5 |
| salmon/0.14.1 | None | |
| samtools/1.14 | None | |
| samtools/1.9 | None | |
| sas/9.4 | None | |
| scalapack/2.0.2 | None | |
| singularity/3.8.3 | None | |
| snap/20131129 | None | |
| sortmerna/3.0.3 | None | Requries at least compiler/gcc/6.5 |
| spades/3.13.1 | None | Requries at least compiler/gcc/6.5 |
| spark/2.4.3 | None | |
| sratoolkit/3.0.0 | None | |
| stacks/2.41 | None | Requries at least compiler/gcc/6.5 |
| stacks/2.60 | None | Requries at least compiler/gcc/6.5 |
| stampy/1.0.32 | None | |
| starccm+/2206 | None | |
| suitesparse/5.4.0 | None | Requries at least compiler/gcc/6.5 |
| sumatra/1.0.34 | None | |
| tbb/2019u8 | Compiler/gcc/6.5 Compiler/gcc/8.3 | |
| tecplot/2021r2 | None | |
| tensorflow-gpu/1.14.0 | None | |
| tensorflow-gpu/2.2.0 | None | |
| tensorflow/1.14.0 | None | |
| tensorflow/2.2.0 | None | |
| transabyss/2.0.1 | None | |
| trimmomatic/0.39 | None | |
| trinity/2.8.5 | None | |
| usearch/11.0.667 | None | |
| usearch/5.2.236 | None | |
| usearch/6.1.544 | None | |
| vasp/5.4.4 | None | |
| vcftools/0.1.16 | None | |
| viennarna/2.4.13 | None | |
| vmd/1.9.3 | None | |
| vsearch/2.13.6 | None | Requries at least compiler/gcc/6.5 |
| zlib/1.2.11 | Compiler/gcc/6.5 Compiler/gcc/8.3 Compiler/intel/19 Compiler/pgi/19 |